The Sergipe-Alagoas Basin, situated in the north-east Brazilian margin, has a long tradition of oil and gas production and the presence and distribution of evaporites play an important role in petroleum systems in the basin. However, little research has focused on the structural evolution of the older, synrift evaporitic sections of the basin. We have focused explicitly in the detailed subsurface structural characterization of the rift in the Alagoas subbasin and the distribution of the Early Aptian evaporites. To accomplish this objective, we interpreted selected 2D and 3D seismic and well data located in two areas known as the Varela Low (VL) and Fazenda Guindaste Low (FGL). We identified diverse deformation styles in those two basin depocenters. Our interpretation indicates that VL consists of a half-graben with a significant rollover structure, controlled by two listric northeast–southwest border faults. The deformation in the hanging wall is also accommodated by release faults and minor antithetic faults. In this depocenter, we mapped in the seismic and the well data an older evaporitic sequence within the Coqueiro Seco Fm., known as Horizonte Salt. This evaporitic section occurs in the internal part of the VL half graben, where it is limited by release and antithetic faults. Significant salt strata growing toward the antithetic fault is observed. Whereas, the FGL represents a graben elongated along the north-east direction and is controlled by several types of structures. We recognized normal synthetic and antithetic faults, transfer zones, release faults, and rollover anticlines in the seismic throughout this depocenter. We mapped an evaporitic section within the Maceió Fm., known as Paripueira Salt, which consists of disconnected salt bodies, restricted to the hanging walls of synrift faults.