Abstract The stratigraphic architecture and relationships to the expression of deep-water architectural elements geomorphology are explored for Cenozoic deposits in the Exmouth Plateau Sub-basin in Northern Carnarvon Basin. We used a high-quality 3D seismic survey and an integrated seismic attribute analysis to provide a guide for seismic interpretation of the mixed carbonate–siliciclastic depositional systems focused on four aspects: morphology, lithology, strata thickness and reflector distortion. Three depositional elements are classified into several categories: mass transport deposits (MTDs), channel systems (channel–levee and braided-like) and lobes, whose deposition is closely related to eustatic changes, and can be explained in a sequence stratigraphic framework. The falling stage system tract is characterized by the initial development of MTDs deposited on the basin floor and small erosive channels on the upper slope. Lobes are deposited in lowstand system tracts while highstand system tracts are characterized by the deposition of MTDs and progradational segments. This mixed carbonate–siliciclastic example proved to be sensitive to other variables such as climate (Middle Miocene Climate Optimum) and plate tectonics (northward Australian Plate drift), which affect geomorphological aspects such as the dimensions and preservation of internal characteristics.