Abstract The San Juan–southern Gulf Islands Archipelago of Washington State, USA and western Canada is located on the upper plate of the Cascadia subduction zone, in the forearc between the trench and volcanic arc. Onland and island investigations show many faults within the region that primarily represent old, inactive faults associated with transport, subduction and accretion of tectonostratigraphic terranes. However, until recently little geologic investigation and mapping have been done in the offshore. From these narrow straits, channels and sounds we have collected and interpreted high-resolution multibeam echosounder bathymetric data, 3.5 kHz sub-bottom and Huntec seismic-reflection profiles, and piston-cores to identify and date recently active faults. Previous studies by us focused on the earlier recognized active Devils Mountain fault zone that bounds the southern part of the Archipelago and the recently reported newly mapped active Skipjack Island fault zone that bounds the northern part. These transcurrent fault zones appear to be deforming and rotating the Archipelago. We concentrate on the unique deformation occurring within the seaways to determine the relationship and styles of faulting associated with these active bounding fault zones and relate the fault geometry and kinematics to one other subduction complex, the New Hebrides island arc of Vanuatu.