Most groundwater produced within coastal Southern California occurs within three main types of siliciclastic basins: (1) deep (>600 m), elongate basins of the Transverse Ranges Physiographic Province, where basin axes and related fluvial systems strike parallel to tectonic structure, (2) deep (>6000 m), broad basins of the Los Angeles and Orange County coastal plains in the northern part of the Peninsular Ranges Physiographic Province, where fluvial systems cut across tectonic structure at high angles, and (3) shallow (75–350 m), relatively narrow fluvial valleys of the generally mountainous southern part of the Peninsular Ranges Physiographic Province in San Diego County. Groundwater pumped for agricultural, industrial, municipal, and private use from coastal aquifers within these basins increased with population growth since the mid-1850s. Despite a significant influx of imported water into the region in recent times, groundwater, although reduced as a component of total consumption, still constitutes a significant component of water supply. Historically, overdraft from the aquifers has caused land surface subsidence, flow between water basins with related migration of groundwater contaminants, as well as seawater intrusion into many shallow coastal aquifers. Although these effects have impacted water quality, most basins, particularly those with deeper aquifer systems, meet or exceed state and national primary and secondary drinking water standards. Municipalities, academicians, and local water and governmental agencies have studied the stratigraphy of these basins intensely since the early 1900s with the goals of understanding and better managing the important groundwater resource. Lack of a coordinated effort, due in part to jurisdictional issues, combined with the application of lithostratigraphic correlation techniques (based primarily on well cuttings coupled with limited borehole geophysics) have produced an often confusing, and occasionally conflicting, litany of names for the various formations, lithofacies, and aquifer systems identified within these basins. Despite these nomenclatural problems, available data show that most basins contain similar sequences of deposits and share similar geologic histories dominated by glacio-eustatic sea-level fluctuations, and overprinted by syndepositional and postdepositional tectonic deformation. Impermeable, indurated mid-Tertiary units typically form the base of each siliciclastic ground-water basin. These units are overlain by stacked sequences of Pliocene to Holocene interbedded marine, paralic, fluvial, and alluvial sediment (weakly indurated, folded, and fractured) that commonly contain the historically named “80-foot sand,” “200-foot sand,” and “400-foot gravel” in the upper part of the section. An unconformity, cut during the latest Pleistocene lowstand (δ 18 O stage 2; ca. 18 ka), forms a major sequence boundary that separates these units from the overlying Holocene fluvial sands and gravels. Unconfined aquifers occur in amalgamated coarse facies near the bounding mountains (forebay area). These units are inferred to become lithologically more complex toward the center of the basins and coast line, where interbedded permeable and low-permeability alluvial, fluvial, paralic, and marine facies contain confined aquifers (pressure area). Coastal bounding faults limit intrabasin and/or inter-basin flow in parts of many basins.

Development of the coastal aquifer systems of Southern California has resulted in overdraft, changes in streamflow, seawater intrusion, land subsidence, increased vertical flow between aquifers, and a redirection of regional flow toward pumping centers. These water-management challenges can be more effectively addressed by incorporating new understanding of the geologic, hydrologic, and geochemical setting of these aquifers. Groundwater and surface-water flow are controlled, in part, by the geologic setting. The physiographic province and related tectonic fabric control the relation between the direction of geomorphic features and the flow of water. Geologic structures such as faults and folding also control the direction of flow and connectivity of groundwater flow. The layering of sediments and their structural association can also influence pathways of groundwater flow and seawater intrusion. Submarine canyons control the shortest potential flow paths that can result in seawater intrusion. The location and extent of offshore outcrops can also affect the flow of groundwater and the potential for seawater intrusion and land subsidence in coastal aquifer systems. As coastal aquifer systems are developed, the source and movement of ground-water and surface-water resources change. In particular, groundwater flow is affected by the relative contributions of different types of inflows and outflows, such as pump-age from multi-aquifer wells within basal or upper coarse-grained units, streamflow infiltration, and artificial recharge. These natural and anthropogenic inflows and outflows represent the supply and demand components of the water budgets of ground-water within coastal watersheds. They are all significantly controlled by climate variability related to major climate cycles, such as the El Niño–Southern Oscillation and the Pacific Decadal Oscillation. The combination of natural forcings and anthropogenic stresses redirects the flow of groundwater and either mitigates or exacerbates the potential adverse effects of resource development, such as declining water levels, sea-water intrusion, land subsidence, and mixing of different waters. Streamflow also has been affected by development of coastal aquifer systems and related conjunctive use. Saline water is the largest water-quality problem in Southern California coastal aquifer systems. Seawater intrusion is a significant source of saline water, but saline water is also known to come from other sources and processes. Seawater intrusion is typically restricted to the coarse-grained units at the base of fining-upward sequences of terrestrial deposits, and at the top of coarsening upward sequences of marine deposits. This results in layered and narrow intrusion fronts. Maintaining the sustainability of Southern California coastal aquifers requires joint management of surface water and groundwater (conjunctive use). This requires new data collection and analyses (including research drilling, modern geohydrologic investigations, and development of detailed computer groundwater models that simulate the supply and demand components separately), implementation of new facilities (including spreading and injection facilities for artificial recharge), and establishment of new institutions and policies that help to sustain the water resources and better manage regional development.