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Improving reproducibility of geoscience models with Sciunit

Raza Ahmad, Young Don Choi, Jonathan L. Goodall, David Tarboton, Ayman Nassar and Tanu Malik
Improving reproducibility of geoscience models with Sciunit (in Recent advancement in geoinformatics and data science, Xiaogang Ma (editor), Matty Mookerjee (editor), Leslie Hsu (editor) and Denise Hills (editor))
Special Paper - Geological Society of America (March 2023) 558

Abstract

For science to reliably support new discoveries, its results must be reproducible. Assessing reproducibility is a challenge in many fields-including the geosciences- that rely on computational methods to support these discoveries. Reproducibility in these studies is particularly difficult; the researchers conducting studies must agree to openly share research artifacts, provide documentation of underlying hardware and software dependencies, ensure that computational procedures executed by the original researcher are portable and execute in different environments, and, finally, verify if the results produced are consistent. Often these tasks prove to be tedious and challenging for researchers.Sciunit (https://sciunit.run) is a system for easily containerizing, sharing, and tracking deterministic computational applications across environments. Geoscience applications in the fields of hydrology, solid Earth, and space science have actively used Sciunit to encapsulate, port, and repeat workflows across computational environments. In this chapter, we provide a comprehensive survey of geoscience applications that have used Sciunit to improve sharing and reproducibility. We classify the applications based on their reproducibility requirements and show how Sciunit accommodates relevant interfaces and architectural components to support reproducibility requirements within each application. We aim to provide these applications as a Sciunit compendium of use cases for replicability, benchmarking, and improving the conduct of reproducible science in other fields.


ISSN: 0072-1077
EISSN: 2331-219X
Coden: GSAPAZ
Serial Title: Special Paper - Geological Society of America
Serial Volume: 558
Title: Improving reproducibility of geoscience models with Sciunit
Title: Recent advancement in geoinformatics and data science
Author(s): Ahmad, RazaChoi, Young DonGoodall, Jonathan L.Tarboton, DavidNassar, AymanMalik, Tanu
Author(s): Ma, Xiaogangeditor
Author(s): Mookerjee, Mattyeditor
Author(s): Hsu, Leslieeditor
Author(s): Hills, Deniseeditor
Affiliation: DePaul University, College of Computing and Digital Media, Chicago, IL, United States
Affiliation: University of Idaho, Department of Computer Science, Moscow, ID, United States
Published: 20230322
Text Language: English
Publisher: Geological Society of America (GSA), Boulder, CO, United States
References: 22
Accession Number: 2023-055294
Categories: Miscellaneous
Document Type: Serial
Bibliographic Level: Analytic
Illustration Description: illus.
Secondary Affiliation: University of Virginia, USA, United StatesUtah State University, USA, United States
Country of Publication: United States
Secondary Affiliation: GeoRef, Copyright 2023, American Geosciences Institute.
Update Code: 2023
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